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Joined: Mar 2008
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Regardless of what subject one discusses, cheersmily cheerleaders for the mainstream consistently boast about the "peer-review system". So how effective is this QA (quality assurance) program? Far less than advertised.

http://cogprints.org/5197/ has a downloadable version of a report which is quite comprehensive and enlightening. The author surveyed the results of 68 (!!!) studies of the peer-review process itself. He also consulted previous surveys of multiple studies.

Here are some findings
Quote
Reviewers generally work without extrinsic rewards. Their names are not revealed, so their
reputations do not depend on their doing high quality reviews. Perhaps this leads them to spend little
5
time on their reviews. In any event, on average, reviewers spend between two and six hours in
reviewing a paper (Jauch & Wall 1989; King, McDonald & Roderer 1981; Lock & Smith 1990;
Yankauer 1990), although they often wait for months before doing their reviews. They seldom use
structured procedures. Rarely do they contribute new data or conduct analyses. Typically, they are
not held accountable for following proper scientific procedures. They match their opinions against
the scientific work by the authors.

Two to six hours? I've spent comparable time responding to posts.

Quote
Bradley (1981) asked
authors about their experience on the ?last compulsorily revised article published in a refereed
journal.@ When asked whether the changes advocated by the referees were based on ?whim, bias, or
personal preference,@ only 23% said none were, while 31% said that this applied to some important
changes. Forty percent of the respondents said that some of the referees had not read the paper
carefully.

Not surprising. While I have seen some fairly short reports, 2 to 6 hours wouldn't be enough to carefully inspect quite a few I've seen.
Quote
Reviewers appear to base their judgments on cues that have only a weak relation to quality.
Such cues include (1) statistical significance, (2) large sample sizes, (3) complex procedures, and
(4) obscure writing. Researchers might use these cues to gain acceptance of marginal papers
(Armstrong 1982).
Although it typically has little relationship to whether the findings are important, correct, or
useful, statistical significance plays a strong role in publication decisions as shown by studies in
management, psychology, and medicine (Begg & Berlin 1988; Greenwald 1975; Hubbard &
Armstrong 1992; Salsburg 1985; Sterling, Rosenbaum, & Weinkam 1995). The case against
statistical significance is summarized for psychologists by Cohen (1994) and for economists by
McCloskey & Ziliak (1996).

...

Complex procedures serve as a favorable cue for reviewers. One wonders whether simpler
procedures would suffice. For example, in the field of forecasting, where it is possible to assess the
effectiveness of alternate methods, complex procedures seldom help and they sometimes harm
accuracy (Armstrong 1985). Nevertheless, papers with complex procedures dominate the forecasting
literature.

...

Obscure writing impresses academics. I asked professors to evaluate selections from
conclusions from four published papers (Armstrong 1980). For each paper, they were randomly
assigned either a complex version (using big words and long sentences, but holding content
constant), the original text, or a simpler version. The professors gave higher ratings to authors of the
most obscure passages. Apparently, such writing, being difficult to understand, leads the reader to
conclude that the writer must be very intelligent.

Obscure writing! We can wish this to be a joke, but it ain't. Obscure writing is preferred.

You really should take a look at this stuff yourself if you're interested. I'm omitting the "quality improvement" part. Basically, reviewers do demonstrably tend to make suggestions which do improve the finished product.
Quote
Although journal peer review improves quality, it does not assure it. It seems likely that
errors can be found in any published paper. Consider such a simple measure of quality as the
accuracy of references. Evans, Nadjari & Burchell (1990) studied the references cited in three
medical journals and found a 48% error rate. They said that ?a detailed analysis of quotation errors
raises doubt in many cases that the original reference was read by the authors.@ Eichorn and
Yankauer (1987) found that 31% of the references in public health journals contained errors, and 3%
of these were such that they could not locate the references. In addition and more important, Eichorn
and Yankauer found that the authors= descriptions of previous studies differed from the original authors= interpretations for 30% of the citations, with half of these descriptions bring unrelated to the
authors= contentions.

Horrobin=s (1982) opinion, as editor of two biomedical journals, was that only one-third of
reviews are accurate. In an analysis of 216 reviews for 108 manuscripts on reading and language,
Fagan (1990) concluded that reviewers made mistakes.


Murray (1988) evaluated the statistical procedures described in 28 papers that had been
published in the British Journal of Surgery and concluded that four papers should have been
rejected, seven needed major revisions, and 11 needed minor changes. Thus, only 21% of the papers
passed this post-publication peer review without the need for changes.
There's more, but I've gotta draw the line somewhere.

In the section entitled "Fairness", we find
Quote
One belief is that authors should receive the same treatment as one another. This does not
always happen. Peters & Ceci (1982) conducted a quasi-experiment in which they concluded that
reviewers were biased against authors from unknown or less-prestigious institutions. The results of
this experiment were surprising. When I showed this design to a group of 22 academic researchers
as a proposed study, they did poorly at predicting the results (Armstrong 1982). For example, they
expected that 46% of the studies would be rejected as ?adding nothing new.@ In fact, none were.

...

Lloyd (1990) conducted an experiment in which she sent for reviews on the identical
manuscript on psychology with names that were obviously male or female (all fictitious) . She found
that female-authored manuscripts were accepted significantly more often by female reviewers (62%)
than by male reviewers (21%).

There is much, much more than I'm going to paste. I'll throw in just one more, because it relates so directly to our discussions here.
Quote
Mahoney (1977) showed that reviewers rejected papers with controversial findings because, they said, the methodology was poor, while they accepted papers with identical methodology that supported conventional beliefs.
Shocking! shockedeyes

...or is it? crazymarch


Dark Matter + Dark Energy = Dark Truth

"We find that such evidence demonstrates that the ID argument is dependent upon setting a scientifically unreasonable burden of proof for the theory of evolution." - Judge Jones Kitzmiller case
http://www.talkreason.org/articles/Falsify.cfm

"To Compel A Man To Furnish Funds For The Propagation Of Ideas He Disbelieves And Abhors Is Sinful And Tyrannical." - Thomas Jefferson

"And can the liberties of a nation be thought secure when we have removed their only firm basis, a conviction in the minds of the people that these liberties are the gift of God? That they are not to be violated but with his wrath?" - Thomas Jefferson
Joined: Mar 2008
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From Nature, the publication started by T.H. Huxley to promote evolutionism (after the first one failed)
Quote
For authors and funding organizations, peer review provides an important veneer of respectability. Findings published in a famous journal take on the aura of the journal's reputation. This may be well founded ďż˝ some journals invest a lot of effort in selecting, checking and publishing articles. Yet, even the most-respected journals have been caught out and, despite extensive peer review, have ended up publishing fraudulent or seriously flawed material.

http://www.nature.com/nature/peerreview/debate/nature04990.html

see also

http://www.nature.com/nature/journal/v444/n7122/full/444971b.html

And here's a nice piece on the topic
Quote
Confirmatory bias is the tendency to emphasize and believe experiences that support one's views and to ignore or discredit those that do not. The effects of this tendency have been repeatedly documented in clinical research. However, its ramifications for the behavior of scientists have yet to be adequately explored. For example, although publication is a critical element in determining the contribution and impact of scientific findings, little research attention has been devoted to the variables operative in journal review policies. In the present study, 7S journal reviewers were asked to referee manuscripts that described identical experimental procedures but which reported positive, negative, mixed, or no results. In addition to showing poor interrater agreement, reviewers were strongly biased against manuscripts that reported results contrary to their theoretical perspective. The implications of these findings for epistemology and the peer review system are briefly addressed.

This one's really good. Best part:
Quote
One study found that the vast majority of scientists drawn from a national sample showed a strong preference for "confirmatory" experiments (Mahoney & Kimper, 1976). Over half of these scientists did not even recognize disconfirmation (modus tollens) as a valid reasoning form! In another study the logical reasoning skills of 30 scientists were compared to those of 15 relatively uneducated Protestant ministers (Mahoney & DeMonbreun, 1977). Where there were performance differences, they tended to favor the ministers. Confirmatory bias was prevalent in both groups, but the ministers used disconfirmatory logic almost twice as often as the scientists did.
Protestant ministers doing a better job applying logic than the "professional scientists" - now that must've hurt some pride. Maybe the universities need to focus a little less on brainwashing and a little more on common sense? Naw - too risky.


Dark Matter + Dark Energy = Dark Truth

"We find that such evidence demonstrates that the ID argument is dependent upon setting a scientifically unreasonable burden of proof for the theory of evolution." - Judge Jones Kitzmiller case
http://www.talkreason.org/articles/Falsify.cfm

"To Compel A Man To Furnish Funds For The Propagation Of Ideas He Disbelieves And Abhors Is Sinful And Tyrannical." - Thomas Jefferson

"And can the liberties of a nation be thought secure when we have removed their only firm basis, a conviction in the minds of the people that these liberties are the gift of God? That they are not to be violated but with his wrath?" - Thomas Jefferson
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Now allow me to add a little bold to some peer-review hype, which could probably stand to be peer-reviewed itself. (As a safety precaution, you are advised not to consume liquids or solids while reading.)
Quote
What is Peer Review?

You can think of peer review as a "stamp of approval" from academic experts. When an article is published in a peer-reviewed journal, readers can be certain that experts in the relevant field have read it and, independent of their own particular opinions, verified it to meet a high standard of scholarship. Scholars rely on peer review to ensure that the conversation they have with each other is always based in good research and the established standards of their discipline.


Quote
If an article has been published in a peer-reviewed journal, you can assume that:

* it doesn't duplicate work that has already been done by other scholars
* it presents a worthwhile approach to the topic
* it exists as part of a standing conversation on the topic, as represented by its citations to other scholarship
* it meets the above and other standards of the discipline, as generally agreed upon by its scholars
You better assume, 'cause if you know what's what, you sure ain't gonna conclude.

Many a defender of peer-review will contend "it's better than nothing." In many ways it is. "Two heads are better than one". This we know. That's a far cry from the hype. It's nowhere near accomplishing what anyone expects from it, including its advocates.

It is has also proven "better than nothing" at preventing the publication of anything that departs from orthodoxy. Hence the desperate need to overrate it.


Dark Matter + Dark Energy = Dark Truth

"We find that such evidence demonstrates that the ID argument is dependent upon setting a scientifically unreasonable burden of proof for the theory of evolution." - Judge Jones Kitzmiller case
http://www.talkreason.org/articles/Falsify.cfm

"To Compel A Man To Furnish Funds For The Propagation Of Ideas He Disbelieves And Abhors Is Sinful And Tyrannical." - Thomas Jefferson

"And can the liberties of a nation be thought secure when we have removed their only firm basis, a conviction in the minds of the people that these liberties are the gift of God? That they are not to be violated but with his wrath?" - Thomas Jefferson
Joined: Mar 2008
Posts: 1,315
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Here's a factiod that's sure to please some, and perhaps gain a subscriber or two

Quote
When the Biological Society of Washington issued its embarrassing apology for publishing the paper, the organization pledged that arguments for Intelligent Design "will not be addressed in future issues of the Proceedings," regardless of whether the paper passes peer review.

That settle that! If an unwritten policy doesn't get the job done, put it in writing so everyone understands.

Source:
http://www.crosswalk.com/1284640/page0/


Dark Matter + Dark Energy = Dark Truth

"We find that such evidence demonstrates that the ID argument is dependent upon setting a scientifically unreasonable burden of proof for the theory of evolution." - Judge Jones Kitzmiller case
http://www.talkreason.org/articles/Falsify.cfm

"To Compel A Man To Furnish Funds For The Propagation Of Ideas He Disbelieves And Abhors Is Sinful And Tyrannical." - Thomas Jefferson

"And can the liberties of a nation be thought secure when we have removed their only firm basis, a conviction in the minds of the people that these liberties are the gift of God? That they are not to be violated but with his wrath?" - Thomas Jefferson
Joined: Mar 2008
Posts: 1,315
CTD
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It almost seems like overkill at this point, but CMI has an excellent article on the "peer review system," and it feels like I'd be negligent if I didn't mention it.

Too much to summarize, and really too many highlights to copy & paste 'em all. Funniest: ever heard of Watson & Crick's landmark DNA paper? Not peer-reviewed. Guess it's just trash, huh? Isn't that the rule?


Dark Matter + Dark Energy = Dark Truth

"We find that such evidence demonstrates that the ID argument is dependent upon setting a scientifically unreasonable burden of proof for the theory of evolution." - Judge Jones Kitzmiller case
http://www.talkreason.org/articles/Falsify.cfm

"To Compel A Man To Furnish Funds For The Propagation Of Ideas He Disbelieves And Abhors Is Sinful And Tyrannical." - Thomas Jefferson

"And can the liberties of a nation be thought secure when we have removed their only firm basis, a conviction in the minds of the people that these liberties are the gift of God? That they are not to be violated but with his wrath?" - Thomas Jefferson
Joined: Mar 2008
Posts: 1,315
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The Atlantic has an excellent piece I recommend, entitled "Lies, Damned Lies, and Medical Science"

Here are but a couple of relevant passages:
Quote
But beyond the headlines, Ioannidis was shocked at the range and reach of the reversals he was seeing in everyday medical research. “Randomized controlled trials,” which compare how one group responds to a treatment against how an identical group fares without the treatment, had long been considered nearly unshakable evidence, but they, too, ended up being wrong some of the time. “I realized even our gold-standard research had a lot of problems,” he says. Baffled, he started looking for the specific ways in which studies were going wrong. And before long he discovered that the range of errors being committed was astonishing: from what questions researchers posed, to how they set up the studies, to which patients they recruited for the studies, to which measurements they took, to how they analyzed the data, to how they presented their results, to how particular studies came to be published in medical journals.

This array suggested a bigger, underlying dysfunction, and Ioannidis thought he knew what it was. “The studies were biased,” he says. “Sometimes they were overtly biased. Sometimes it was difficult to see the bias, but it was there.” Researchers headed into their studies wanting certain results—and, lo and behold, they were getting them. We think of the scientific process as being objective, rigorous, and even ruthless in separating out what is true from what we merely wish to be true, but in fact it’s easy to manipulate results, even unintentionally or unconsciously. “At every step in the process, there is room to distort results, a way to make a stronger claim or to select what is going to be concluded,” says Ioannidis. “There is an intellectual conflict of interest that pressures researchers to find whatever it is that is most likely to get them funded.”


Quote
Though scientists and science journalists are constantly talking up the value of the peer-review process, researchers admit among themselves that biased, erroneous, and even blatantly fraudulent studies easily slip through it. Nature, the grande dame of science journals, stated in a 2006 editorial, “Scientists understand that peer review per se provides only a minimal assurance of quality, and that the public conception of peer review as a stamp of authentication is far from the truth.”

I think this may be welcome and very applicable in other areas of the forum as well, and I encourage members to post a link or two to it elsewhere.


Dark Matter + Dark Energy = Dark Truth

"We find that such evidence demonstrates that the ID argument is dependent upon setting a scientifically unreasonable burden of proof for the theory of evolution." - Judge Jones Kitzmiller case
http://www.talkreason.org/articles/Falsify.cfm

"To Compel A Man To Furnish Funds For The Propagation Of Ideas He Disbelieves And Abhors Is Sinful And Tyrannical." - Thomas Jefferson

"And can the liberties of a nation be thought secure when we have removed their only firm basis, a conviction in the minds of the people that these liberties are the gift of God? That they are not to be violated but with his wrath?" - Thomas Jefferson

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